PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0450.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 175aa    MW: 18655.9 Da    PI: 9.9566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-20858256
                     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  SapurV1A.0032s0450.1.p  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                            69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-13857IPR001471AP2/ERF domain
SMARTSM003806.1E-36871IPR001471AP2/ERF domain
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22865IPR016177DNA-binding domain
CDDcd000186.37E-30865No hitNo description
Gene3DG3DSA:3.30.730.105.0E-32865IPR001471AP2/ERF domain
PRINTSPR003675.0E-11920IPR001471AP2/ERF domain
PRINTSPR003675.0E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPSPPPS ATSGLSFDLN LPSDPHHHHL RWSSSPHVGS HRFGGLGEFL QTGVVFQEMN  120
VNAAGAAAAS GSVAKNEGPG AGAPEPENVA LVSFSGVVRR GLPIDLNEPP PLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21865563ATERF1
3gcc_A1e-21865563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377396.11e-108ERF domain protein 12
SwissprotQ94ID62e-50ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLB9N3I51e-108B9N3I5_POPTR; ERF domain protein 12
STRINGPOPTR_0011s05570.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-50ERF domain protein 12